Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

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Cellular Metabolic Process (GO:0044237) Genes Targeted by hsa-mir-889 in GLB Brain Sun Cluster 27 Table contains all genes in the GLB Brain Sun cluster number 27. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-889 GO:0044237 8664 EIF3D eukaryotic translation initiation factor 3, subunit D [Source:HGNC Symbol;Acc:3278] zzz999 Yes 79228 THOC6 THO complex 6 homolog (Drosophila) [Source:HGNC Symbol;Acc:28369] zzz999 Yes 9391 CIAO1 cytosolic iron-sulfur protein assembly 1 [Source:HGNC Symbol;Acc:14280] T Yes 54360 CYTL1 cytokine-like 1 [Source:HGNC Symbol;Acc:24435] zzz999 Yes 9716 AQR aquarius homolog (mouse) [Source:HGNC Symbol;Acc:29513] zzz999 Yes 10985 GCN1L1 GCN1 general control of amino-acid synthesis 1-like 1 (yeast) [Source:HGNC Symbol;Acc:4199] zzz999 Yes 84804 MFSD9 major facilitator superfamily domain containing 9 [Source:HGNC Symbol;Acc:28158] zzz999 79665 DHX40 DEAH (Asp-Glu-Ala-His) box polypeptide 40 [Source:HGNC Symbol;Acc:18018] T 80004 ESRP2 epithelial splicing regulatory protein 2 [Source:HGNC Symbol;Acc:26152] zzz999 Yes 8940 TOP3B topoisomerase (DNA) III beta [Source:HGNC Symbol;Acc:11993] zzz999 Yes 4999 ORC2 origin recognition complex, subunit 2 [Source:HGNC Symbol;Acc:8488] T Yes 115509 ZNF689 zinc finger protein 689 [Source:HGNC Symbol;Acc:25173] zzz999 Yes 133619 PRRC1 proline-rich coiled-coil 1 [Source:HGNC Symbol;Acc:28164] T 65251 ZNF649 zinc finger protein 649 [Source:HGNC Symbol;Acc:25741] zzz999 Yes 114131 UCN3 urocortin 3 (stresscopin) [Source:HGNC Symbol;Acc:17781] zzz999 Yes 89970 RSPRY1 ring finger and SPRY domain containing 1 [Source:HGNC Symbol;Acc:29420] zzz999 9688 NUP93 nucleoporin 93kDa [Source:HGNC Symbol;Acc:28958] zzz999 57570 TRMT5 TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:23141] zzz999 Yes 64857 PLEKHG2 pleckstrin homology domain containing, family G (with RhoGef domain) member 2 [Source:HGNC Symbol;Acc:29515] T 10576 CCT2 chaperonin containing TCP1, subunit 2 (beta) [Source:HGNC Symbol;Acc:1615] zzz999 Yes 54756 IL17RD interleukin 17 receptor D [Source:HGNC Symbol;Acc:17616] T 3417 IDH1 isocitrate dehydrogenase 1 (NADP+), soluble [Source:HGNC Symbol;Acc:5382] P T Yes 57117 INTS12 integrator complex subunit 12 [Source:HGNC Symbol;Acc:25067] zzz999 Yes 64425 POLR1E polymerase (RNA) I polypeptide E, 53kDa [Source:HGNC Symbol;Acc:17631] zzz999 Yes 8086 AAAS achalasia, adrenocortical insufficiency, alacrimia [Source:HGNC Symbol;Acc:13666] zzz999 115560 ZNF501 zinc finger protein 501 [Source:HGNC Symbol;Acc:23717] zzz999 Yes 220988 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941] T Yes 22938 SNW1 SNW domain containing 1 [Source:HGNC Symbol;Acc:16696] zzz999 Yes 10610 ST6GALNAC2 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 [Source:HGNC Symbol;Acc:10867] zzz999 Yes 23493 HEY2 hairy/enhancer-of-split related with YRPW motif 2 [Source:HGNC Symbol;Acc:4881] zzz999 Yes 3608 ILF2 interleukin enhancer binding factor 2, 45kDa [Source:HGNC Symbol;Acc:6037] zzz999 Yes 30833 NT5C 5', 3'-nucleotidase, cytosolic [Source:HGNC Symbol;Acc:17144] zzz999 Yes 7486 WRN Werner syndrome, RecQ helicase-like [Source:HGNC Symbol;Acc:12791] T Yes 80304 C2orf44 chromosome 2 open reading frame 44 [Source:HGNC Symbol;Acc:26157] T 661 POLR3D polymerase (RNA) III (DNA directed) polypeptide D, 44kDa [Source:HGNC Symbol;Acc:1080] zzz999 Yes 83607 AMMECR1L AMME chromosomal region gene 1-like [Source:HGNC Symbol;Acc:28658] zzz999 23462 HEY1 hairy/enhancer-of-split related with YRPW motif 1 [Source:HGNC Symbol;Acc:4880] zzz999 Yes 84085 FBXO30 F-box protein 30 [Source:HGNC Symbol;Acc:15600] T 55299 BRIX1 BRX1, biogenesis of ribosomes, homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:24170] zzz999 Yes 5375 PMP2 peripheral myelin protein 2 [Source:HGNC Symbol;Acc:9117] T 84844 PHF5A PHD finger protein 5A [Source:HGNC Symbol;Acc:18000] T Yes 56919 DHX33 DEAH (Asp-Glu-Ala-His) box polypeptide 33 [Source:HGNC Symbol;Acc:16718] zzz999 22850 ADNP2 ADNP homeobox 2 [Source:HGNC Symbol;Acc:23803] T Yes 9785 DHX38 DEAH (Asp-Glu-Ala-His) box polypeptide 38 [Source:HGNC Symbol;Acc:17211] zzz999 Yes 55353 LAPTM4B lysosomal protein transmembrane 4 beta [Source:HGNC Symbol;Acc:13646] zzz999 4841 NONO non-POU domain containing, octamer-binding [Source:HGNC Symbol;Acc:7871] zzz999 Yes 64418 TMEM168 transmembrane protein 168 [Source:HGNC Symbol;Acc:25826] T 2773 GNAI3 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 [Source:HGNC Symbol;Acc:4387] zzz999 Yes 27340 UTP20 UTP20, small subunit (SSU) processome component, homolog (yeast) [Source:HGNC Symbol;Acc:17897] zzz999 Yes 51690 LSM7 LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:20470] zzz999 Yes 8449 DHX16 DEAH (Asp-Glu-Ala-His) box polypeptide 16 [Source:HGNC Symbol;Acc:2739] zzz999 Yes 29777 ABT1 activator of basal transcription 1 [Source:HGNC Symbol;Acc:17369] zzz999 Yes 25963 TMEM87A transmembrane protein 87A [Source:HGNC Symbol;Acc:24522] T 26155 NOC2L nucleolar complex associated 2 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:24517] zzz999 1464 CSPG4 chondroitin sulfate proteoglycan 4 [Source:HGNC Symbol;Acc:2466] zzz999 Yes 1459 CSNK2A2 casein kinase 2, alpha prime polypeptide [Source:HGNC Symbol;Acc:2459] zzz999 Yes 8467 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 [Source:HGNC Symbol;Acc:11101] zzz999 Yes 7638 ZNF221 zinc finger protein 221 [Source:HGNC Symbol;Acc:13014] zzz999 Yes 84650 EBPL emopamil binding protein-like [Source:HGNC Symbol;Acc:18061] zzz999 152579 SCFD2 sec1 family domain containing 2 [Source:HGNC Symbol;Acc:30676] zzz999 79070 KDELC1 KDEL (Lys-Asp-Glu-Leu) containing 1 [Source:HGNC Symbol;Acc:19350] zzz999 22868 FASTKD2 FAST kinase domains 2 [Source:HGNC Symbol;Acc:29160] zzz999 Yes 84260 TCHP trichoplein, keratin filament binding [Source:HGNC Symbol;Acc:28135] T 7353 UFD1L ubiquitin fusion degradation 1 like (yeast) [Source:HGNC Symbol;Acc:12520] zzz999 Yes 7157 TP53 tumor protein p53 [Source:HGNC Symbol;Acc:11998] zzz999 Yes 8669 EIF3J eukaryotic translation initiation factor 3, subunit J [Source:HGNC Symbol;Acc:3270] P T Yes 79029 SPATA5L1 spermatogenesis associated 5-like 1 [Source:HGNC Symbol;Acc:28762] T 2968 GTF2H4 general transcription factor IIH, polypeptide 4, 52kDa [Source:HGNC Symbol;Acc:4658] zzz999 Yes 673 BRAF v-raf murine sarcoma viral oncogene homolog B1 [Source:HGNC Symbol;Acc:1097] zzz999 Yes 6746 SSR2 signal sequence receptor, beta (translocon-associated protein beta) [Source:HGNC Symbol;Acc:11324] zzz999 22803 XRN2 5'-3' exoribonuclease 2 [Source:HGNC Symbol;Acc:12836] zzz999 Yes 1054 CEBPG CCAAT/enhancer binding protein (C/EBP), gamma [Source:HGNC Symbol;Acc:1837] T Yes 11232 POLG2 polymerase (DNA directed), gamma 2, accessory subunit [Source:HGNC Symbol;Acc:9180] zzz999 Yes 51136 RNFT1 ring finger protein, transmembrane 1 [Source:HGNC Symbol;Acc:30206] zzz999 2963 GTF2F2 general transcription factor IIF, polypeptide 2, 30kDa [Source:HGNC Symbol;Acc:4653] zzz999 Yes 29090 C18orf55 chromosome 18 open reading frame 55 [Source:HGNC Symbol;Acc:25010] zzz999 1407 CRY1 cryptochrome 1 (photolyase-like) [Source:HGNC Symbol;Acc:2384] zzz999 Yes 55172 C14orf104 chromosome 14 open reading frame 104 [Source:HGNC Symbol;Acc:20188] T 22880 MORC2 MORC family CW-type zinc finger 2 [Source:HGNC Symbol;Acc:23573] zzz999 83690 CRISPLD1 cysteine-rich secretory protein LCCL domain containing 1 [Source:HGNC Symbol;Acc:18206] T 7748 ZNF195 zinc finger protein 195 [Source:HGNC Symbol;Acc:12986] zzz999 Yes 55783 FTSJD1 FtsJ methyltransferase domain containing 1 [Source:HGNC Symbol;Acc:25635] T 23212 RRS1 RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:17083] zzz999 10052 GJC1 gap junction protein, gamma 1, 45kDa [Source:HGNC Symbol;Acc:4280] T 23029 RBM34 RNA binding motif protein 34 [Source:HGNC Symbol;Acc:28965] zzz999 83935 TMEM133 transmembrane protein 133 [Source:HGNC Symbol;Acc:24033] T 25926 NOL11 nucleolar protein 11 [Source:HGNC Symbol;Acc:24557] zzz999 5981 RFC1 replication factor C (activator 1) 1, 145kDa [Source:HGNC Symbol;Acc:9969] zzz999 Yes 6427 SRSF2 serine/arginine-rich splicing factor 2 [Source:HGNC Symbol;Acc:10783] P T Yes 8161 COIL coilin [Source:HGNC Symbol;Acc:2184] T 57038 RARS2 arginyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:21406] zzz999 Yes 23478 SEC11A SEC11 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:17718] T Yes 340252 ZNF680 zinc finger protein 680 [Source:HGNC Symbol;Acc:26897] T Yes 339324 ZNF260 zinc finger protein 260 [Source:HGNC Symbol;Acc:13499] T Yes 51018 RRP15 ribosomal RNA processing 15 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:24255] T 10013 HDAC6 histone deacetylase 6 [Source:HGNC Symbol;Acc:14064] zzz999 Yes 4691 NCL nucleolin [Source:HGNC Symbol;Acc:7667] zzz999 2033 EP300 E1A binding protein p300 [Source:HGNC Symbol;Acc:3373] T Yes 6624 FSCN1 fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus) [Source:HGNC Symbol;Acc:11148] zzz999 27242 TNFRSF21 tumor necrosis factor receptor superfamily, member 21 [Source:HGNC Symbol;Acc:13469] zzz999 Yes 6136 RPL12 ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] zzz999 Yes 440093 H3F3C H3 histone, family 3C [Source:HGNC Symbol;Acc:33164] zzz999 4904 YBX1 Y box binding protein 1 [Source:HGNC Symbol;Acc:8014] zzz999 Yes 2976 GTF3C2 general transcription factor IIIC, polypeptide 2, beta 110kDa [Source:HGNC Symbol;Acc:4665] zzz999 Yes 1665 DHX15 DEAH (Asp-Glu-Ala-His) box polypeptide 15 [Source:HGNC Symbol;Acc:2738] zzz999 Yes 348235 SKA2 spindle and kinetochore associated complex subunit 2 [Source:HGNC Symbol;Acc:28006] T 284443 ZNF493 zinc finger protein 493 [Source:HGNC Symbol;Acc:23708] T Yes 144245 ALG10B asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast) [Source:HGNC Symbol;Acc:31088] T Yes 7407 VARS valyl-tRNA synthetase [Source:HGNC Symbol;Acc:12651] zzz999 Yes 51002 TPRKB TP53RK binding protein [Source:HGNC Symbol;Acc:24259] T 54934 C12orf41 chromosome 12 open reading frame 41 [Source:HGNC Symbol;Acc:26024] zzz999 113115 FAM54A family with sequence similarity 54, member A [Source:HGNC Symbol;Acc:21115] zzz999 9188 DDX21 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Source:HGNC Symbol;Acc:2744] T 57514 ARHGAP31 Rho GTPase activating protein 31 [Source:HGNC Symbol;Acc:29216] zzz999 10473 HMGN4 high mobility group nucleosomal binding domain 4 [Source:HGNC Symbol;Acc:4989] zzz999 79959 CEP76 centrosomal protein 76kDa [Source:HGNC Symbol;Acc:25727] T 3727 JUND jun D proto-oncogene [Source:HGNC Symbol;Acc:6206] zzz999 Yes 6634 SNRPD3 Small nuclear ribonucleoprotein Sm D3 [Source:UniProtKB/Swiss-Prot;Acc:P62318] zzz999 Yes 590 BCHE butyrylcholinesterase [Source:HGNC Symbol;Acc:983] T Yes 11140 CDC37 cell division cycle 37 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:1735] zzz999 Yes 80856 KIAA1715 KIAA1715 [Source:HGNC Symbol;Acc:21610] T 81542 TMX1 thioredoxin-related transmembrane protein 1 [Source:HGNC Symbol;Acc:15487] zzz999 Yes 5469 MED1 mediator complex subunit 1 [Source:HGNC Symbol;Acc:9234] zzz999 Yes 51124 IER3IP1 immediate early response 3 interacting protein 1 [Source:HGNC Symbol;Acc:18550] zzz999 84547 PGBD1 piggyBac transposable element derived 1 [Source:HGNC Symbol;Acc:19398] zzz999 Yes 64682 ANAPC1 anaphase promoting complex subunit 1 [Source:HGNC Symbol;Acc:19988] zzz999 Yes 84273 C4orf14 chromosome 4 open reading frame 14 [Source:HGNC Symbol;Acc:28473] T 6738 TROVE2 TROVE domain family, member 2 [Source:HGNC Symbol;Acc:11313] T Yes 91272 BOD1 biorientation of chromosomes in cell division 1 [Source:HGNC Symbol;Acc:25114] zzz999 22919 MAPRE1 microtubule-associated protein, RP/EB family, member 1 [Source:HGNC Symbol;Acc:6890] zzz999 6472 SHMT2 serine hydroxymethyltransferase 2 (mitochondrial) [Source:HGNC Symbol;Acc:10852] zzz999 Yes 22893 BAHD1 bromo adjacent homology domain containing 1 [Source:HGNC Symbol;Acc:29153] zzz999 Yes 56852 RAD18 RAD18 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:18278] T Yes 57130 ATP13A1 ATPase type 13A1 [Source:HGNC Symbol;Acc:24215] zzz999 Yes 347734 SLC35B2 solute carrier family 35, member B2 [Source:HGNC Symbol;Acc:16872] zzz999 51397 COMMD10 COMM domain containing 10 [Source:HGNC Symbol;Acc:30201] zzz999 112858 TP53RK TP53 regulating kinase [Source:HGNC Symbol;Acc:16197] zzz999 Yes 11266 DUSP12 dual specificity phosphatase 12 [Source:HGNC Symbol;Acc:3067] P T Yes 54919 HEATR2 HEAT repeat containing 2 [Source:HGNC Symbol;Acc:26013] T 112849 C14orf149 chromosome 14 open reading frame 149 [Source:HGNC Symbol;Acc:20488] zzz999 152007 GLIPR2 GLI pathogenesis-related 2 [Source:HGNC Symbol;Acc:18007] zzz999 25913 POT1 protection of telomeres 1 homolog (S. pombe) [Source:HGNC Symbol;Acc:17284] zzz999 Yes 144108 SPTY2D1 SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae) [Source:HGNC Symbol;Acc:26818] T 55033 FKBP14 FK506 binding protein 14, 22 kDa [Source:HGNC Symbol;Acc:18625] zzz999 Yes 84246 MED10 mediator complex subunit 10 [Source:HGNC Symbol;Acc:28760] zzz999 Yes 1622 DBI diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) [Source:HGNC Symbol;Acc:2690] zzz999 55319 C4orf43 chromosome 4 open reading frame 43 [Source:HGNC Symbol;Acc:25638] zzz999 5501 PPP1CC protein phosphatase 1, catalytic subunit, gamma isozyme [Source:HGNC Symbol;Acc:9283] zzz999 Yes 55192 DNAJC17 DnaJ (Hsp40) homolog, subfamily C, member 17 [Source:HGNC Symbol;Acc:25556] zzz999 Yes 51474 LIMA1 LIM domain and actin binding 1 [Source:HGNC Symbol;Acc:24636] T 6879 TAF7 TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa [Source:HGNC Symbol;Acc:11541] zzz999 Yes 5558 zzz999 zzz999 zzz999 Yes 10492 SYNCRIP synaptotagmin binding, cytoplasmic RNA interacting protein [Source:HGNC Symbol;Acc:16918] zzz999 Yes 7589 ZSCAN21 zinc finger and SCAN domain containing 21 [Source:HGNC Symbol;Acc:13104] zzz999 Yes 7705 ZNF146 zinc finger protein 146 [Source:HGNC Symbol;Acc:12931] T Yes 9939 RBM8A RNA binding motif protein 8A [Source:HGNC Symbol;Acc:9905] T Yes 84289 ING5 inhibitor of growth family, member 5 [Source:HGNC Symbol;Acc:19421] zzz999 Yes 84128 WDR75 WD repeat domain 75 [Source:HGNC Symbol;Acc:25725] T 126375 ZNF792 zinc finger protein 792 [Source:HGNC Symbol;Acc:24751] zzz999 Yes 51167 CYB5R4 cytochrome b5 reductase 4 [Source:HGNC Symbol;Acc:20147] zzz999 Yes 323 APBB2 amyloid beta (A4) precursor protein-binding, family B, member 2 [Source:HGNC Symbol;Acc:582] zzz999 Yes 10228 STX6 syntaxin 6 [Source:HGNC Symbol;Acc:11441] T 55017 C14orf119 chromosome 14 open reading frame 119 [Source:HGNC Symbol;Acc:20270] zzz999 7574 ZNF26 Zinc finger protein 26 [Source:UniProtKB/Swiss-Prot;Acc:P17031] T Yes 2297 zzz999 zzz999 zzz999 Yes 11340 EXOSC8 exosome component 8 [Source:HGNC Symbol;Acc:17035] zzz999 Yes 1615 DARS aspartyl-tRNA synthetase [Source:HGNC Symbol;Acc:2678] zzz999 Yes 158 ADSL adenylosuccinate lyase [Source:HGNC Symbol;Acc:291] zzz999 Yes 2956 MSH6 mutS homolog 6 (E. coli) [Source:HGNC Symbol;Acc:7329] zzz999 Yes 8295 TRRAP transformation/transcription domain-associated protein [Source:HGNC Symbol;Acc:12347] zzz999 Yes 6993 DYNLT1 dynein, light chain, Tctex-type 1 [Source:HGNC Symbol;Acc:11697] zzz999 143684 FAM76B family with sequence similarity 76, member B [Source:HGNC Symbol;Acc:28492] T

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